PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1091860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 309aa    MW: 34306.8 Da    PI: 8.6752
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1091860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.52.2e-2963143266
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................s 66 
                       g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                +
  Lj2g3v1091860.1  63 FGGKDRHSKVCTIRGLRDRRVRLSVPTAILLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLpippgnitlgypslvsP 143
                      689*************************************************************44444444444433330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2665126IPR005333Transcription factor, TCP
PROSITE profilePS5136930.465123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTETIFKMNK RGPTEAADFP LKQEGLSSHD DDKVAKASAA SSSASSQWLK LKDPRIVRVS  60
RAFGGKDRHS KVCTIRGLRD RRVRLSVPTA ILLYDLQDRL GLNQPSKVVD WLLNAAKHEI  120
DELPPLPIPP GNITLGYPSL VSPNTTLWKS KPKEVVVTEK DNWVSRNEDE DVKQGSNEDV  180
LPNNVFPIRA NHPSFLGLLN TVHPLGYNQF EPSANVGHLA NLGFVNQGDI PSNINAVTFP  240
STLTLSTQPY FPSHVGAMEM DPRQINHYQM LSSSSQNLTI CDDLHSSQHL MSQSGKPFSF  300
VGKFNFKQN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511156.11e-118PREDICTED: transcription factor TCP13
RefseqXP_014511237.11e-118PREDICTED: transcription factor TCP13
SwissprotQ9S7W53e-48TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A151R2M51e-120A0A151R2M5_CAJCA; Transcription factor TCP13
STRINGGLYMA19G03786.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-39plastid transcription factor 1